Mount Kenya University Masters Programmes, the masters courses or programmes bided by the Mount Kenya University are all listed below.
- Executive Master of Business Administration
- International Executive Master of Business Administration
- Master in Accounting
- Master of Clinical Medicine
- Master of Arts in Environmental Security and sustainable development
- Master of Arts in Counseling Psychology
- Master of Arts in Development Studies
- Master of Arts in Economics
- Master of Arts in English Language and Linguistics
- Master of Arts in English Literature
- Master of Arts in Geography
- Master of Arts in History
- Master of Arts in International Relations and Diplomacy
- Master of Arts in Journalism and Media Studies
- Master of Arts in Kiswahili
- Master of Arts in Monitoring and Evaluation
- Master of Arts in Religious Studies
- Master of Arts in Law Enforcement and Justice Administration
- Master of Arts in Criminology and Security Studies
- Master of Business Administration
- Master of Education
- Master of Education in Early Childhood Studies
- Master of Education in Special Needs Education
- Master of Governance and Ethics
- Master of Laws
- Master of Public Administration and Management
- Master of Public Health
- Master of Science in Applied Entomology
- Master of Science in Ecology and conservation
- Master of Science in Hospitality Management
- Master of Science in Information Sciences
- Master of Science in Information Technology
- Master of Science in Medical Laboratory Sciences
- Master of Science in Medical-Surgical Nursing
- Master of Science in Nursing (General)
- Master of Science in Procurement and Supplies Management
- Master of Science in Statistics
- Master of Science in Finance
- Master of Science in Entrepreneurship
- Master of Science in Accounting
- Master of Science in Marketing
- Master of Science in Human Resource Management
- Master of Science in Project Planning and Management
- Master of Science in Chemistry
- Master of Science in Biotechnology